Asif Khan

Postdoctoral Fellow Harvard Medical School.

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I am a postdoctoral fellow at Harvard Medical School in Prof. Chris Sander’s Lab. My research focuses on developing machine learning and AI algorithms to advance cancer therapy. The emphasis of my work lies on interpretable approaches that can guide clinical decision-making. I am currently working on:

  • Incorporating feature selection and uncertainty quantification techniques in deep sequential models to predict cancer risk with greater precision and reliability over time.
  • Machine learning approaches to analyse spatial omics data of triple-negative breast cancer to predict the response of patients to chemotherapy.

I have a PhD from the University of Edinburgh, advised by Prof. Amos Storkey in the Bayesian and Neural Systems research group. My doctoral research was at the intersection of geometry and deep representation learning. The machine learning topics that are of particular interest to me:

  • Deep representation learning and generative modelling.
  • Equivariant neural networks.
  • Geometric and topological deep learning.

Please look at my publications for further insights into my work and research.

Selected Publications

  1. Adversarial robustness of VAEs through the lens of local geometry
    Khan, Asif, and Storkey, Amos
    International Conference on Artificial Intelligence and Statistics (AISTATS) 2023
  2. Toward real-world automated antibody design with combinatorial Bayesian optimization
    Khan, Asif, Cowen-Rivers, Alexander I, Grosnit, Antoine, Robert, Philippe A, Greiff, Victor, Smorodina, Eva, Rawat, Puneet, Akbar, Rahmad, Dreczkowski, Kamil, Tutunov, Rasul, Bou-Ammar, Dany, Wang, Jun, Storkey, Amos, and Bou-Ammar, Haitham
    Cell Reports Methods 2023
  3. HALO: HAmiltonian Latent Operators for content and motion disentanglement in image sequences
    Khan, Asif, and Storkey, Amos
    Advances in Neural Information Processing Systems (NeurIPS) 2022